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(202) Production(s) de l'année 2020
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Analogies between growing dense active matter and soft driven glasses
Auteur(s): Tjhung E., Berthier L.
(Article) Publié:
Physical Review Research, vol. p.043334 (2020)
Texte intégral en Openaccess :
Ref HAL: hal-03093880_v1
Ref Arxiv: 2002.00622
DOI: 10.1103/PhysRevResearch.2.043334
Ref. & Cit.: NASA ADS
Exporter : BibTex | endNote
Résumé: We develop a minimal model to describe growing dense active matter such as biological tissues, bacterial colonies and biofilms, that are driven by a competition between particle division and steric repulsion. We provide a detailed numerical analysis of collective and single particle dynamics. We show that the microscopic dynamics can be understood as the superposition of an affine radial component due to the global growth, and of a more complex non-affine component which displays features typical of driven soft glassy materials, such as aging, compressed exponential decay of time correlation functions, and a crossover from superdiffusive behaviour at short scales to subdiffusive behaviour at larger scales. This analogy emerges because particle division at the microscale leads to a global expansion which then plays a role analogous to shear flow in soft driven glasses. We conclude that growing dense active matter and sheared dense suspensions can generically be described by the same underlying physics.
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Buffer layers inhomogeneity and coupling with epitaxial graphene unravelled by Raman scattering and graphene peeling
Auteur(s): Wang T., Huntzinger J.-R., Bayle M., Roblin C., Decams Jean-Manuel, Zahab A. A., Contreras S., Paillet M., Landois P.
(Article) Publié:
Carbon, vol. 163 p.224-233 (2020)
Texte intégral en Openaccess :
Ref HAL: hal-03034438_v1
DOI: 10.1016/j.carbon.2020.03.027
Exporter : BibTex | endNote
Résumé: The so-called buffer layer (BL) is a carbon rich reconstructed layer formed during SiC (0001) sublimation.The covalent bonds between some carbon atoms in this layer and underlying silicon atoms makes itdifferent from epitaxial graphene. We report a systematical and statistical investigation of the BLsignature and its coupling with epitaxial graphene by Raman spectroscopy. Three different BLs arestudied: bare buffer layer obtained by direct growth (BL0), interfacial buffer layer between graphene andSiC (c-BL1) and the interfacial buffer layer without graphene above (u-BL1). To obtain the latter, wedevelop a mechanical exfoliation of graphene by removing an epoxy-based resin or nickel layer. The BLsare ordered-like on the whole BL growth temperature range. BL0 Raman signature may vary from sampleto sample but forms patches on the same terrace. u-BL1 share similar properties with BL0, albeit withmore variability. These BLs have a strikingly larger overall intensity than BL with graphene on top. Thesignal high frequency side onset upshifts upon graphene coverage, unexplainable by a simple straineffect. Two fine peaks (1235, 1360 cm1), present for epitaxial monolayer and absent for BL and transferred graphene. These findings point to a coupling between graphene and BL.
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Physical modeling of a sliding clamp mechanism for the spreading of ParB at short genomic distance from bacterial centromere sites
Auteur(s): Walter J.-C., Rech Jerome, Walliser N.-O., Dorignac J., Geniet F., Palmeri J., Parmeggiani A., Bouet Jean-Yves
(Article) Publié:
Iscience, vol. 23 p.101861 (2020)
Texte intégral en Openaccess :
Ref HAL: hal-03052753_v1
DOI: 10.1016/j.isci.2020.101861
Exporter : BibTex | endNote
Résumé: Bacterial ParB partitioning proteins involved in chromosomes and low-copy-number plasmid segregation are CTP-dependent molecular switches. CTP-binding converts ParB dimers to DNA clamps, allowing unidimensional diffusion along the DNA. This sliding property has been proposed to explain the ParB spreading over large distances from parS centromere sites where ParB is specifically loaded. We modeled such a ‘Clamping & sliding’ mechanism as a typical reaction-diffusion system, compared it to the F-plasmid ParB DNA binding pattern, and found that it can account neither for the long range of ParB binding to DNA, nor for the rapid assembly kinetics observed in vivo after parS duplication. Also, it predicts a strong effect on the F-plasmid ParB binding pattern from the presence of a roadblock that is not observed in ChIP-seq. We conclude that although ‘Clamping & sliding’ can occur at short distances from parS, another mechanism must apply for ParB recruitment at larger genomic distances.
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Role of normal stress in the creep dynamics and failure of a biopolymer gel
Auteur(s): Pommella A., Cipelletti L., Ramos L.
(Document sans référence bibliographique) 2020-12-17Texte intégral en Openaccess :
Ref HAL: hal-03081334_v1
Ref Arxiv: 2012.09827
Ref. & Cit.: NASA ADS
Exporter : BibTex | endNote
Résumé: We investigate the delayed rupture of biopolymer gels under a constant shear load by simultaneous dynamic light scattering and rheology measurements. We unveil the crucial role of normal stresses built up during gelation: all samples that eventually fracture self-weaken during the gelation process, as revealed by a partial relaxation of the normal stress concomitant to a burst of microscopic plastic rearrangements. Upon applying a shear stress, weakened gels exhibit in the creep regime distinctive signatures in their microscopic dynamics, which anticipate macroscopic fracture by up to thousands of seconds. The dynamics in fracturing gels are faster than those of non-fracturing gels and exhibit large spatio-temporal fluctuations. A spatially localized region with significant plasticity eventually nucleates, expands progressively, and finally invades the whole sample triggering macroscopic failure.
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Experimental and Mathematical modeling of radial water transport in plants
Auteur(s): Boursiac Yann, Felbacq D., Velez-Cardona Ana Maria, Lhuissier Henri, Metzger Bloen
Conference: Physics-Biology Interface (web conference, FR, 2020-12-17)
Ref HAL: hal-03080457_v1
Exporter : BibTex | endNote
Résumé: Water transport in plant roots is of vital importance: it is a necessary transport to feed the rest of the organism in most vascular plants. To reach the xylem vessels, which ensure the long-distance transport to the aerial parts of the plant, water has first to flow across the root tissues surrounding the xylem. This flow, denoted to as radial transport, is not easily amenable to the experimentation, and has been studied mostly by measurements at a larger scale, and by models that poorly take into account cells and roots geometries. We adopted a continuous description of stationary root radial water transport to investigate how the geometry and the permeability contrasts between root compartments affect the transport of water. We experimentally modeled the root radial section as a two-dimensional and composite porous material with variable water permeabilities. It mimics the most salient water transport features of the root anatomy and allows a direct isualization of the water pathways. We also present 2D continuous numerical simulations of the water flow, in which we systematically varied the permeabilities of the different tissues. Our approach provides the physical premises to explain preferential sub-cellular radial routes from one cell to another and look for the subcellular pattern of structures or molecules involved in water transport.
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Effect of AlGaN interlayer on the GaN/InGaN/GaN/AlGaN multi-quantum wells structural properties toward red light emission
Auteur(s): Ruterana Pierre, Morales Magali, Chery Nicolas
(Article) Publié:
Journal Of Applied Physics, vol. 128 p.223102 (2020)
Texte intégral en Openaccess :
Ref HAL: hal-03047502_v1
DOI: 10.1063/5.0027119
Exporter : BibTex | endNote
Résumé: In this work, InGaN/GaN Multi-Quantum Wells (MQWs) with strain compensating AlGaN interlayers grown by metalorganic vapour phase epitaxy have been investigated by high resolution X-ray diffraction, transmission electron microscopy and photoluminescence (PL). For different AlGaN strain compensating layer thicknesses varying from 0 to 10.6 nm, a detailed X-ray diffraction analysis shows that the MQW stack become completely strained on GaN along a and c. The compensation is full from an AlGaN layer thickness of 5.2 nm, and this does not change up to the largest one that has been investigated. In this instance, the AlGaN was grown at the same temperature as the GaN barrier, on top of a protective 3 nm GaN. It is found that the crystalline quality of the system is progressively degraded when the thickness of the AlGaN interlayer is increased through strain concentrated domains which randomly form inside the 3 nm GaN low temperature layer. These domains systematically contribute to a local decrease of the QW thickness and most probably to an efficient localisation of carriers. Despite these defects, the PL is highly improved towards the red wavelengths and compares with the reports on ultrathin AlGaN layers where this has been correlated to the improvement of the crystalline quality although with less strain compensation.
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Spatiotemporal electronic spin fluctuations in random nuclear fields in n-CdTe
Auteur(s): Cronenberger S., Abbas C., Scalbert D., Boukari H.
(Document sans référence bibliographique) Texte intégral en Openaccess :
Ref HAL: hal-03048487_v1
Ref Arxiv: 1910.11805
Ref. & Cit.: NASA ADS
Exporter : BibTex | endNote
Résumé: We report on the dynamics of electron spins in n-doped CdTe layers that differs significantly from the expected response derived from the studies dedicated to electron spin relaxation in n-GaAs. At zero magnetic field, the electron spin noise spectra exhibit a two-peak structure-a zero-frequency line and a satellite-that we attribute to the electron spin precession in a frozen random nuclear spin distribution. This implies a surprisingly long electron spin correlation time whatever the doping level, even above the Mott transition. Using spatiotemporal spin noise spectroscopy, we demonstrate that the observation of a satellite in the spin noise spectra and a fast spin diffusion are mutually exclusive. This is consistent with a shortening of the electron spin correlation time due to hopping between donors. We interpret our data via a model assuming that the low temperature spin relaxation is due to hopping between donors in presence of hyperfine and anisotropic exchange interactions. Most of our results can be interpreted in this framework. First, a transition from inhomogeneous to homogeneous broadening of the spin noise peaks and the disappearance of the satellite are observed when the hopping rate becomes larger than the Larmor period induced by the local nuclear fields. In the regime of homogeneous broadening the ratio between the spin diffusion constant and the spin relaxation rate has a value in good agreement with the Dresselhaus constant. In the regime of inhomogeneous broadening, most of the samples exhibit a broadening consistent with the distribution of local nuclear fields. We obtain a new estimate of the hyperfine constants in CdTe and a value of 0.10 Tesla for the maximum nuclear field. Finally, our study also reveals a puzzle as our samples behave as if the active donor concentration was reduced by several orders of magnitudes with respect to the nominal values.
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